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Glossary
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Hydroxyl group An oxygen atom with one hydrogen atom covalently attached Immunoglobulins Also called antibodies, proteins that can recognize and bind to foreign objects (such as viruses and bacteria) Induced dipole A distortion of the electron cloud of a neutral, nonpolar molecule due to the presence of an electric field, so that the molecule becomes a dipole Interference The combining of two or more waves in a specific location resulting in increased or decreased wave height at that location See also constructive and destructive interference Intermediate filament A mid-sized tubelike or ropelike structure that is part of the cytoskeleton Interphase The phase of the cell cycle where most of the cell s energy goes into growth and DNA replication Ion An atom or molecule with a charge, due to one or more missing electrons or due to one or more extra electrons Ion channel A type of transport protein that spans the bilayer and folds in a way to create a hydrophilic tunnel through which ions and other small hydrophilic molecules can pass Ionic bond A bond that holds two atoms together due to each atom being an ion, one positive (cation) and one negative (anion) Ketone A carbonyl carbon that is also directly connected to two other atoms neither of which is hydrogen Laminar flow Fluid flow in which the velocity of the fluid varies in layers, or according to the distance from the vessel walls, due to friction Left-handed helix A helix that turns counterclockwise as you move along the length of the helix Ligand A smaller molecule or atom that binds to a larger molecule Ligand binding An association of one or more ligands (smaller molecules) with a larger molecule, held together by non-covalent forces Linking number (Lk) The number of times that one closed curve is linked to another closed curve Lipid Fat or oil A molecule characterized by being not soluble in water and soluble in nonpolar solvents Lipid vesicle A small hollow sphere of lipid molecules The lipid molecules making up the vesicle are organized into a lipid bilayer
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B i o p h y s i c s D e mys tifie D
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Lipoprotein A complex of protein and lipid, used to carry lipids to where they are needed and able to carry lipids through places where the lipids would otherwise be insoluble Liposome A lipid bilayer sphere with a void in the middle, also called a vesicle or lipid vesicle Liquid crystalline phase The relatively fluid phase of a lipid bilayer Lysosome A vesicle that contains enzymes (called lysozymes) that specialize in breaking down or digesting larger molecules Machine A device that can alter the direction and/or size of a force Macromolecule A very large molecule, often a polymer such as DNA, proteins, carbohydrates, and phospholipids Although there is no clear cutoff in size that defines a molecule as a macromolecule, common usage of the word is typically reserved for molecules that contain more than 1000 atoms Mechanics The branch of physics that deals with the application of forces to physical objects Membrane A thin flexible sheetlike structure that separates things In the case of a biological cell, membranes separate between the cell and the outside world or within the cell between different regions of the cell Membrane protein A protein that has formed a quaternary structure with a membrane so as to become part of the membrane Membrane transport protein A membrane protein that is involved (passively or actively) in transporting other molecules across the membrane Micelle A lipid ball with the hydrocarbon chains pointed in toward the center, and the polar head groups at the surface of the ball Microfilament The smallest of several tubelike or ropelike structures that are part of the cytoskeleton Microtubule The largest of several tubelike structures that are part of the cytoskeleton Mitochondrion (plural: mitochondria) An organelle that carries out the role of generating ATP molecules for use as energy currency throughout the cell Model A hypothesis, guess, or theory, with some details about the mechanism of how a system undergoes a certain process Molar extinction coefficient See extinction coefficient Molecular and subcellular biophysics The branch of biophysics that deals with the behavior of biomolecules and the workings of individual cells
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